PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016493472.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 149aa    MW: 17063.6 Da    PI: 10.365
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016493472.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.39.5e-191659245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    +ienk nrqv+fskRrn ++KKA+EL v++ aev +i+f + +k
  XP_016493472.1 16 KIENKNNRQVSFSKRRNSVFKKANELAVMTCAEVGIIVFPPGNK 59
                    79*************************************88777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.2E-22766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.18767IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-22876IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-14929IPR002100Transcription factor, MADS-box
PfamPF003195.3E-201663IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-142944IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-144465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MSTRLIKGRK SVCLAKIENK NNRQVSFSKR RNSVFKKANE LAVMTCAEVG IIVFPPGNKP  60
YFFGHPNVNE TIHKYVCEER SPSPSSQANS RKKNKNLESQ QELFRGPIEK MNYTEASMLK  120
EGLEDLLLKV KNYGTKRGYG YENAKWKAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016493472.11e-107PREDICTED: agamous-like MADS-box protein AGL61
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-22AGAMOUS-like 61